| Human tissues |
Test |
GSE30352 |
A data looking at the evolution of gene expression levels in mammalian organs |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30352 |
The evolution of gene expression levels in mammalian organs |
https://www.nature.com/articles/nature10532 |
Cerebellum |
Heart |
Download File |
Download File |
|
| Neuroblastoma |
Group 1 |
GSE202634 |
CRISPR-mediated deletion of ASCL1 in neuroblastomoma line |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202634 |
The proneural transcription factor ASCL1 regulates cell proliferation and primes for differentiation in neuroblastoma |
https://www.frontiersin.org/articles/10.3389/fcell.2022.942579/full |
Parental |
ASCL1 KO |
Download File |
Download File |
Compare transcriptiton factor ASCL1 within neuroblastoma |
| Neuro/PD |
Group 2 |
GSE125239 |
RNA sequencing of fibroblasts and induced neuronal cells from persons with and without Parkinsons Disease |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125239 |
Autophagy impairments in directly reprogrammed neurons in patients with idiopathic Parkinson’s disease |
https://pubmed.ncbi.nlm.nih.gov/36150382/ |
Control |
Parkinson’s Disease |
Download File |
Download File |
Comparison of induced Neurons of patients with parkinson’s disease |
| Liver Alcoholic |
Group 3 |
GSE155907 |
human liver explants from 6 patients with alcoholic hepatitis (liver transplant) . 4 control patients with no history of chronic liver diseases (liver resection) |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155907 |
Super enhancer regulation of cytokine-induced chemokine production in alcoholic hepatitis |
https://www.nature.com/articles/s41467-021-24843-w |
Control |
Alcoholic Hepatitis |
Download File |
Download File |
|
| Neural differentiation |
Group 4 |
GSE123753 |
RNA sequencing of neuronal differentiation datasets of iPSCs with Rett syndrome mutations |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123753 |
Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome |
https://www.cell.com/cell-reports/fulltext/S2211-1247(20)30288-6 |
Wild type |
MECP2 exons 3-4 deletion |
Download File |
Download File |
Comparison of WT and a deletion of MECP2 within iPS cells to understand the changes of ribosome engagement in Rett Syndrome |
| Alzheimers and aging |
Group 5 |
GSE104704 |
RNA-seq in healthy and diseased human brains; using 8 young healthy brains (Young), 10 aged healthy brains (Old), and 12 aged diseased brains (AD) |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104704 |
Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease |
https://www.nature.com/articles/s41593-018-0101-9 |
Old |
Aged, diseased |
Download File |
Download File |
Comparison of Old against Old, Parkinson’s disease patients |
| COVID-19 |
Group 6 |
GSE152418 |
Systems biological assessment of immunity to severe and mild COVID-19 infections |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE152418 |
Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans |
https://www.science.org/doi/full/10.1126/science.abc6261?rfr_dat=cr_pub++0pubmed&url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org |
COVID Moderate |
COVID Severe |
Download File |
Download File |
Comparison between COVID Severe and Moderate PBMCs |
| Lupus |
Group 7 |
GSE72420 |
The Ro60 Autoantigen Binds Endogenous Retroelements and Regulates Inflammatory Gene Expression |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72420 |
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression |
https://www.science.org/doi/10.1126/science.aac7442?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed |
Untreated |
IFNa |
Download File |
Download File |
Comparison of healthy donor PBMCs with or without interferon-alpha stimulation |
| Lymphoma |
Group 8 |
GSE159808 |
Transcriptome profiling of Mantle Cell Lymphoma and healthy controls using RNA-seq |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159808 |
Expression patterns and prognostic potential of circular RNAs in mantle cell lymphoma: a study of younger patients from the MCL2 and MCL3 clinical trials |
https://www.nature.com/articles/s41375-021-01311-4 |
Healthy |
Mantle Cell Lymphoma (MCL) |
Download File |
Download File |
Comparison of Lymph Node Specimens in MCL patients |
| Myelodysplastic syndrome |
Group 9 |
GSE65349 |
SRSF2 mutations impair hematopoiesis and alter exon recognition |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65349 |
mutants and knockdown of SRSF2 in TF-1 cells generated by deep sequencing. |
https://www.cell.com/cancer-cell/fulltext/S1535-6108(15)00139-7 |
Control |
SRSF2_KD |
Download File |
Download File |
Cell line (K562 cells) expressing WT SRSF2 and KD of SRSF2 |