BABS 3291
Course Structure
Practical W1-5
Sample Datasets
Week 1A Setting Up on Katana
Week 1B Introducing the Shell
Week 1C Navigating Files and Directories
Week 1D Writing Scripts and Working with Data
Week 2A Exploring your dataset
Week 2B Redirection
Week 2C Creating scripts and submitting
Week 3 Using FASTQC For Data Quality Report
Week 4 Using Trimmomatic for Trimming and Filtering
Week 5 Quiz and Prac Revision
Practical W6-10
Week 6 Flexibility Week
Week 7 Using Kallisto for Pseudoalignment
Week 8A Using DEGUST for Differential Expression Analysis
Week 8B Explaining DE Summary
Week 8C Understanding the Theory Behind Differential Expression Analysis
Tutorial Overview
Week 1
Week 2
Week 3
Week 4
Week 5
Key Information
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BABS 3291 Website
Practical Handbook