Component |
HPW |
Weeks |
Time |
Day |
Location |
Practical (Computer labs) |
2 |
1-5,7-10 |
1400-1600 |
Thu |
E26 Lab 11-12 |
Tutorial (Computer Labs) |
2 |
1-5,7-10 |
1000-1200 |
Fri |
CATS 11-12 |
Practical and Tutorial Schedule
Prac/Tutorial sessions will be delivered synchronously as a combination of online and face-to-face live sessions with support from lecturers and demonstrators. Presentations will be recorded for reference
Practical (2 hour) - THU 2PM-4PM - E26/LABS 11-12 |
Tutorial (2 hour) - FRI 10-12 PM CATS 11-12/Teams |
Assignment and week of submission |
|
|
15-Feb |
Intro to Unix and High Performance Computing on Katana |
16-Feb |
Dataset research/ Talk Prep |
|
22-Feb |
Exploring Online Genetic Resources - SRA and Ensembl |
23-Feb |
Q&A Prac and Talk Prep |
|
29-Feb |
Using FASTQC for Data Quality report |
01-Mar |
TALKs |
Wk 3: Assignment 1a-Talk |
07-Mar |
Using Trimmomatic for Trimming and Filtering |
8-Mar |
Q&A Prac |
|
14-Mar |
Assigment 1B Quiz and Prac revision |
15-Mar |
The complexity of the genome (JM) |
Wk 5: Assignment 1B |
21-Mar |
FLEXIBILITY WEEK |
22-Mar |
FLEXIBILITY WEEK |
|
28-Mar |
Using Kallisto for Pseudoalignment |
29-Mar |
GOOD FRIDAY |
|
04-Apr |
Identifying Differentially Expressed Genes |
05-Apr |
Ramaciotti Tour |
|
11-Apr |
Work on prac report |
12-Apr |
Sequencing Technology (JB) |
|
18-Apr |
Work on prac report |
19-Apr |
Work on prac report |
Wk 10: Prac report 18/4 |
25-Apr |
STUDY WEEK |
26-Apr |
STUDY WEEK |
|
Attendance in practicals & tutorials is compulsory unless otherwise announced or prior arrangements have been made.
Allocation of Marks
Assessment Task |
Weight |
Date |
Week Number |
1. RNA-seq Dataset Talk |
10% |
Friday 01 Mar |
Week 3 |
2. Genomics Quiz |
20% |
Thursday 14 Mar 1400 |
Week 5 |
3. Bioinformatics Practical Report |
40% |
Friday 19 April 1400 |
Week 10 |
4. Final Exam |
30% |
See Exam Timetable |
|