Groups Dataset GSE Description Website GSE Paper Paper Website Control Sample Test Sample SraRunTable SRR
Model Dataset Human tissues GSE30352 A data looking at the evolution of gene expression levels in mammalian organs https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30352 The evolution of gene expression levels in mammalian organs https://www.nature.com/articles/nature10532 Cerebellum Heart Download File Download File
Table 1 Neuroblastoma GSE202634 CRISPR-mediated deletion of ASCL1 in neuroblastomoma line https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202634 The proneural transcription factor ASCL1 regulates cell proliferation and primes for differentiation in neuroblastoma https://www.frontiersin.org/articles/10.3389/fcell.2022.942579/full IMR32 Parental IMR32_ASCL1 KO1 Download File Download File
Table 2 Autism Spectrum Disorder GSE107867 RNA-seq to examine RNA editing in Fragile X patients https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107867 Widespread RNA editing dysregulation in brains from autistic individuals https://www.nature.com/articles/s41593-018-0287-x Fragile-X Carrier Download File Download File
Table 3 Liver Alcoholic GSE155907 human liver explants from 6 patients with alcoholic hepatitis (liver transplant) . 4 control patients with no history of chronic liver diseases (liver resection) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155907 Super enhancer regulation of cytokine-induced chemokine production in alcoholic hepatitis https://www.nature.com/articles/s41467-021-24843-w Liver AH Liver no chronic liver disease Download File Download File
Table 4 Neural differentiation GSE123753 RNA sequencing of neuronal differentiation datasets of iPSCs with Rett syndrome mutations https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123753 Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome https://www.cell.com/cell-reports/fulltext/S2211-1247(20)30288-6 Neural progenitor cells Cortical neurons Download File Download File NB. no SRR8314932chr1_chr3
Table 5 Alzheimers and aging GSE104704 RNA-seq in healthy and diseased human brains; using 8 young healthy brains (Young), 10 aged healthy brains (Old), and 12 aged diseased brains (AD) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104704 Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease https://www.nature.com/articles/s41593-018-0101-9 Young healthy brain  tissue Alzheimers brain tissue Download File Download File
Table 6 COVID-19 GSE152418 Systems biological assessment of immunity to severe and mild COVID-19 infections https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE152418 Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans https://www.science.org/doi/full/10.1126/science.abc6261?rfr_dat=cr_pub++0pubmed&url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org S061_257 S145_nCOV001_C Download File Download File
Table 7 Lupus GSE72420 The Ro60 Autoantigen Binds Endogenous Retroelements and Regulates Inflammatory Gene Expression https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72420 The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression https://www.science.org/doi/10.1126/science.aac7442?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed Background Reading PBMC PBMC + IFNa Download File Download File
Table 8 Lymphoma GSE159808 Transcriptome profiling of Mantle Cell Lymphoma and healthy controls using RNA-seq https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159808 Expression patterns and prognostic potential of circular RNAs in mantle cell lymphoma: a study of younger patients from the MCL2 and MCL3 clinical trials https://www.nature.com/articles/s41375-021-01311-4 Healthy-Reactve-LN1 MCL-1 Download File Download File
Don’t Use Neuro/PD GSE125239 RNA sequencing of fibroblasts and induced neuronal cells from persons with and without Parkinsons Disease https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125239 Autophagy impairments in directly reprogrammed neurons in patients with idiopathic Parkinson’s disease https://pubmed.ncbi.nlm.nih.gov/36150382/ iN or fibroblast of persons without PD iN or fibroblast of persons with PD Download File Download File